PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7BL_C12DC1916.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 809aa    MW: 92072.4 Da    PI: 5.6685
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7BL_C12DC1916.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.99.2e-2057143190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 
                            +fY +Y+ + GF ++++++++   +g  +++tf Csk g+++ ++    ++  ++  t+tgCkak+ vk  + +++wev+ leleHnH
  Traes_7BL_C12DC1916.1  57 QFYVAYGCRSGFGITRRSNNTF--DGFRYRSTFICSKGGQSRLRSGV--TRPARKRGTKTGCKAKIIVKDAHfQNRWEVIVLELEHNH 140
                            6****************99988..9999**************99877..77788889***************9*************** PP

                   FAR1  88 ela 90 
                            +l 
  Traes_7BL_C12DC1916.1 141 PLD 143
                            *97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1757144IPR004330FAR1 DNA binding domain
PfamPF105514.7E-19263353IPR018289MULE transposase domain
PfamPF044341.3E-7541573IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.347541577IPR007527Zinc finger, SWIM-type
SMARTSM005753.9E-5552579IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MEEEGYSTES SNEGDVQEDG DKEKSLAEGD VFKPVDMDPE WIPKVGMVFD SEEDAFQFYV  60
AYGCRSGFGI TRRSNNTFDG FRYRSTFICS KGGQSRLRSG VTRPARKRGT KTGCKAKIIV  120
KDAHFQNRWE VIVLELEHNH PLDPGSIKYK KNLENIPFSL NPPRLSEAPQ SSSVVGHSSS  180
FGDSGIPSSA QIEIKTKIDR NRKLKLAEGD LEALVSFFND MQDRNPCFFH SLDMNEQGQL  240
RNVFWADAKS RSSYNYFGDV VAINVTNFSD QYDIQFVSFV GTNHHAQPLL LGCGLLAGRS  300
LGAYVWLFDT CLRCMNAMSP PSIITNYCHD VAIAVKKVFP NSRHRFCLRH ILNELPEKLA  360
GMENKDEMIS TFSTLAYDSV TALDFDKEWQ EMTHQFQLEG NEWLSKLYEV RAQWAPAYVK  420
DFFWAGMSVT DRSDSATDYF DGWLTSGTSV KMFVEQYEAA VRTKLEKETY EDLQSSQMRP  480
QLMTGLPVEE QAAKMYTMEI FQTFLNELGH SFHCNYSILD RSDSVVTYIL SEHVNQTKVD  540
FKVAYDNAED DIWCFCRLFQ FKGILCRHAL TVLRQELVPM IPSKYIIHRW CKDCKLTCSS  600
MSRDVSLSTQ ELGGYDDLYK LGHQYFAEVV ELGSVNSESK DYALSVMREI RDKVISYEKS  660
LRDQRVDSQV STANFAYNPV NEDFTDDALP ISLSTKGWDL MQGQSKRSRK KKLTTPTVLD  720
TLKKKTKRAY NKRRNATANN LCTTVTATDS ITESANVQED QVNEGWPLTS SGAPDTFPYG  780
VETISFDLTQ YNNAPSFHWP ESSSRSQLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3724730.0AK372473.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3002N21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563072.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLW5HQI40.0W5HQI4_WHEAT; Uncharacterized protein
STRINGMLOC_56322.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-109FAR1-related sequence 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]